[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 94 items for (author: bravo & j)

EMDB-40249:
CRISPR-Cas type III-D effector complex bound to a target RNA
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40248:
CRISPR-Cas type III-D effector complex
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40250:
CRISPR-Cas type III-D effector complex bound to a self-target RNA in the pre-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40251:
CRISPR-Cas type III-D effector complex bound to self-target RNA in a post-cleavage state
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40276:
CRISPR-Cas type III-D effector complex consensus map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40296:
CRISPR-Cas type III-D effector complex local refinement map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40297:
CRISPR-Cas type III-D effector complex bound to a target RNA local refinement map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-40298:
CRISPR-Cas type III-D effector complex bound to a target RNA consensus map
Method: single particle / : Schwartz EA, Taylor DW

EMDB-41358:
Structure of activated SAVED-CHAT filament
Method: single particle / : Bravo JPK, Taylor DW

PDB-8tl0:
Structure of activated SAVED-CHAT filament
Method: single particle / : Bravo JPK, Taylor DW

EMDB-17576:
SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

EMDB-17578:
SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

PDB-8p99:
SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

PDB-8p9y:
SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

EMDB-27393:
D. vulgaris type I-C Cascade bound to dsDNA target
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27403:
type I-C Cascade bound to ssDNA target
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27412:
type I-C Cascade bound to AcrIF2
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

PDB-8dej:
D. vulgaris type I-C Cascade bound to dsDNA target
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

PDB-8dfa:
type I-C Cascade bound to ssDNA target
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

PDB-8dfs:
type I-C Cascade bound to AcrIF2
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27402:
type I-C Cascade
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27409:
type I-C Cascade bound to AcrIC4
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

PDB-8dex:
type I-C Cascade
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

PDB-8dfo:
type I-C Cascade bound to AcrIC4
Method: single particle / : O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW

EMDB-27178:
Structure of Cas12a2 binary complex
Method: single particle / : Bravo JPK, Taylor DW

EMDB-27179:
Cas12a2 quaternary complex
Method: single particle / : Bravo JPK, Taylor DW

EMDB-27180:
Structure of Cas12a2 ternary complex
Method: single particle / : Bravo JPK, Taylor DW

PDB-8d49:
Structure of Cas12a2 binary complex
Method: single particle / : Bravo JPK, Taylor DW

PDB-8d4a:
Cas12a2 quaternary complex
Method: single particle / : Bravo JPK, Taylor DW

PDB-8d4b:
Structure of Cas12a2 ternary complex
Method: single particle / : Bravo JPK, Taylor DW

EMDB-26485:
Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922
Method: single particle / : Yelland JN, Bravo JPK, Black JJB, Taylor DW, Johnson AW

PDB-7ug6:
Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922
Method: single particle / : Yelland JN, Bravo JPK, Black JJB, Taylor DW, Johnson AW

EMDB-15414:
Vaccinia C16 N-terminal domains
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

EMDB-15415:
Vaccinia C16 protein bound to Ku70/Ku80
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

EMDB-15416:
Vaccinia C16 protein bound to Ku70/Ku80
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

PDB-8ag3:
Vaccinia C16 N-terminal domains
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

PDB-8ag4:
Vaccinia C16 protein bound to Ku70/Ku80
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

PDB-8ag5:
Vaccinia C16 protein bound to Ku70/Ku80
Method: single particle / : Rivera-Calzada A, Arribas-Bosacoma R, Pearl LH, Llorca O

EMDB-25363:
The structure of the PP2A-B56gamma1 holoenzyme-PME-1 complex
Method: single particle / : Li Y, Balakrishnan VK, Rowse M, Novikova IV, Xing Y

PDB-7soy:
The structure of the PP2A-B56gamma1 holoenzyme-PME-1 complex
Method: single particle / : Li Y, Balakrishnan VK, Rowse M, Novikova IV, Xing Y

EMDB-13934:
S.c. Condensin core in DNA- and ATP-bound state
Method: single particle / : Lecomte L, Hassler M, Haering C, Eustermann S

EMDB-13950:
S.c. Condensin peripheral Ycg1 subcomplex bound to DNA
Method: single particle / : Lecomte L, Hassler M, Haering C, Eustermann S

PDB-7qen:
S.c. Condensin core in DNA- and ATP-bound state
Method: single particle / : Lecomte L, Hassler M, Haering C, Eustermann S

PDB-7qfw:
S.c. Condensin peripheral Ycg1 subcomplex bound to DNA
Method: single particle / : Lecomte L, Hassler M, Haering C, Eustermann S

EMDB-24938:
DrmAB:ADP
Method: single particle / : Bravo JPK, Taylor DW, Brouns SJJ, Aparicio-Maldonado C

EMDB-24939:
Structure of DrmAB:ADP:DNA complex
Method: single particle / : Bravo JPK, Taylor DW, Brounds SJJ, Aparicio-Maldonado C

PDB-7s9v:
DrmAB:ADP
Method: single particle / : Bravo JPK, Taylor DW, Brouns SJJ, Aparicio-Maldonado C

PDB-7s9w:
Structure of DrmAB:ADP:DNA complex
Method: single particle / : Bravo JPK, Taylor DW, Brounds SJJ, Aparicio-Maldonado C

EMDB-24974:
Structure of type I-D Cascade bound to a dsDNA target
Method: single particle / : Schwartz EA, Taylor DW

EMDB-24976:
Structure of type I-D Cascade bound to a ssRNA target
Method: single particle / : Schwartz EA, Taylor DW

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more